STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR1Next to BRCA1 gene 1 protein isoform X1. (960 aa)    
Predicted Functional Partners:
GABARAPL1
Uncharacterized protein.
   
 0.993
GABARAP
Uncharacterized protein.
   
 0.993
MAP1LC3B
Microtubule-associated protein 1 light chain 3 beta.
   
 0.991
GABARAPL2
Uncharacterized protein.
   
 0.991
F2Z5U0_PIG
Ubiquitin-like domain-containing protein.
   
 
 0.969
RPS27A
Ubiquitin-like domain-containing protein.
   
 
 0.969
SQSTM1
Sequestosome 1.
   
0.968
MAP1LC3A
Microtubule-associated protein 1 light chain 3 alpha.
   
 
 0.909
MAP1LC3C
Microtubule associated protein 1 light chain 3 gamma.
   
 
 0.882
A0A287AMX4_PIG
Uncharacterized protein.
   
 
 0.882
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.