STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRDM7PR/SET domain 7. (466 aa)    
Predicted Functional Partners:
RNF212
RING-type domain-containing protein.
      
 0.785
MEI1
Meiotic double-stranded break formation protein 1.
      
 0.761
HMGN3
High mobility group nucleosomal binding domain 3.
      
 0.728
MSH4
MutS homolog 4.
      
 0.724
SYCP2
Synaptonemal complex protein 2.
      
 0.683
CAMKMT
Calmodulin-lysine N-methyltransferase.
     
 0.654
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
     
  0.650
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
     
  0.650
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
     
  0.650
RAP1B
RAP1B, member of RAS oncogene family.
   
  
 0.615
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.