STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARID5AAT-rich interaction domain 5A. (846 aa)    
Predicted Functional Partners:
SBNO2
Strawberry notch homolog 2.
   
  
 0.659
TRIM15
Tripartite motif-containing protein 15; Belongs to the TRIM/RBCC family.
    
 
 0.563
SMARCB1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
    
 
 0.540
CSRNP1
Cysteine/serine-rich nuclear protein 1 isoform b.
   
  
 0.539
ADGRE3
Adhesion G protein-coupled receptor E3; Belongs to the G-protein coupled receptor 2 family.
      
 0.536
FAM118A
Family with sequence similarity 118 member A.
    
 
 0.526
RAPGEFL1
Rap guanine nucleotide exchange factor like 1.
   
  
 0.526
PBRM1
Polybromo 1.
   
 
 0.525
LIN54
Lin-54 DREAM MuvB core complex component.
   
  
 0.514
NUFIP2
Nuclear FMR1 interacting protein 2.
      
 0.510
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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