STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CISD3CDGSH iron sulfur domain 3. (133 aa)    
Predicted Functional Partners:
VPS13D
Vacuolar protein sorting 13 homolog D.
      
 0.755
ODF3L1
Outer dense fiber of sperm tails 3 like 1.
      
 0.682
CPEB2
Cytoplasmic polyadenylation element binding protein 2.
      
 0.679
CNBP
CCHC-type zinc finger nucleic acid binding protein.
      
 0.678
MRPL24
Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.
   
   0.666
A0A287ABD6_PIG
Ribosomal_L18e/L15P domain-containing protein.
   
 
 0.665
RPL27A
60S ribosomal protein L27a.
   
 
 0.665
SURF1
SURF1-like protein; Component of the MITRAC (mitochondrial translation regulation assembly intermediate of cytochrome c oxidase complex) complex, that regulates cytochrome c oxidase assembly. Belongs to the SURF1 family.
    
 
 0.660
MRPL13
39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.
   
   0.610
MRPS16
28S ribosomal protein S16, mitochondrial.
   
   0.604
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.