STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF3AUPF3A regulator of nonsense mediated mRNA decay. (502 aa)    
Predicted Functional Partners:
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.993
SMG6
SMG6 nonsense mediated mRNA decay factor.
   
 0.982
UPF1
UPF1 RNA helicase and ATPase.
    
 0.982
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 0.981
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
  
  
0.970
SMG7
SMG7 nonsense mediated mRNA decay factor.
   
 0.963
MAGOHB
Mago homolog B, exon junction complex subunit.
    
 0.962
MAGOH
Mago homolog, exon junction complex subunit.
    
 0.962
LOC100153087
Uncharacterized protein.
    
 0.954
NXF1
Nuclear RNA export factor 1.
    
 0.954
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.