FGD4 protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FGD4

Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (1415 aa)

Predicted Functional Partners:

UTP11

0.803

FAM234A

0.803

SBF2

0.790

GDAP1

0.770

RNF122

0.718

SLC39A6

0.683

SH3TC2

0.678

APEH

0.676

COX18

0.671

CCT6B

0.622

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APEH	FAM234A	ENSSSCP00000022971	ENSSSCP00000043162	Acylamino-acid-releasing enzyme; This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser; Belongs to the peptidase S9C family.	Family with sequence similarity 234 member A.	0.731
APEH	FGD4	ENSSSCP00000022971	ENSSSCP00000052678	Acylamino-acid-releasing enzyme; This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser; Belongs to the peptidase S9C family.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.676
APEH	RNF122	ENSSSCP00000022971	ENSSSCP00000057437	Acylamino-acid-releasing enzyme; This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser; Belongs to the peptidase S9C family.	Ring finger protein 122.	0.651
APEH	UTP11	ENSSSCP00000022971	ENSSSCP00000003950	Acylamino-acid-releasing enzyme; This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser; Belongs to the peptidase S9C family.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.731
CCT6B	COX18	ENSSSCP00000027341	ENSSSCP00000009548	Chaperonin containing TCP1 subunit 6B.	Cytochrome c oxidase assembly factor COX18.	0.756
CCT6B	FGD4	ENSSSCP00000027341	ENSSSCP00000052678	Chaperonin containing TCP1 subunit 6B.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.622
COX18	CCT6B	ENSSSCP00000009548	ENSSSCP00000027341	Cytochrome c oxidase assembly factor COX18.	Chaperonin containing TCP1 subunit 6B.	0.756
COX18	FGD4	ENSSSCP00000009548	ENSSSCP00000052678	Cytochrome c oxidase assembly factor COX18.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.671
FAM234A	APEH	ENSSSCP00000043162	ENSSSCP00000022971	Family with sequence similarity 234 member A.	Acylamino-acid-releasing enzyme; This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser; Belongs to the peptidase S9C family.	0.731
FAM234A	FGD4	ENSSSCP00000043162	ENSSSCP00000052678	Family with sequence similarity 234 member A.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.803
FAM234A	RNF122	ENSSSCP00000043162	ENSSSCP00000057437	Family with sequence similarity 234 member A.	Ring finger protein 122.	0.795
FAM234A	UTP11	ENSSSCP00000043162	ENSSSCP00000003950	Family with sequence similarity 234 member A.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.732
FGD4	APEH	ENSSSCP00000052678	ENSSSCP00000022971	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Acylamino-acid-releasing enzyme; This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser; Belongs to the peptidase S9C family.	0.676
FGD4	CCT6B	ENSSSCP00000052678	ENSSSCP00000027341	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Chaperonin containing TCP1 subunit 6B.	0.622
FGD4	COX18	ENSSSCP00000052678	ENSSSCP00000009548	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Cytochrome c oxidase assembly factor COX18.	0.671
FGD4	FAM234A	ENSSSCP00000052678	ENSSSCP00000043162	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Family with sequence similarity 234 member A.	0.803
FGD4	GDAP1	ENSSSCP00000052678	ENSSSCP00000036440	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily.	0.770
FGD4	RNF122	ENSSSCP00000052678	ENSSSCP00000057437	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Ring finger protein 122.	0.718
FGD4	SBF2	ENSSSCP00000052678	ENSSSCP00000027677	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Myotubularin-related protein 13 isoform X1.	0.790
FGD4	SH3TC2	ENSSSCP00000052678	ENSSSCP00000042548	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	SH3 domain and tetratricopeptide repeats 2.	0.678