STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIMS1LIM and senescent cell antigen-like-containing domain protein; Adapter protein in a cytoplasmic complex linking beta- integrins to the actin cytoskeleton, bridges the complex to cell surface receptor tyrosine kinases and growth factor receptors. (397 aa)    
Predicted Functional Partners:
RSU1
Ras suppressor protein 1.
   
 0.990
ILK
Integrin linked kinase.
   
 0.921
PARVB
Parvin beta.
   
 0.914
PARVA
Parvin alpha.
   
 0.909
ASB12
Ankyrin repeat and SOCS box containing 12.
    
 
 0.783
GCC2
GRIP and coiled-coil domain containing 2.
   
  
 0.769
SBK2
SH3 domain binding kinase family member 2; Belongs to the protein kinase superfamily.
      
 0.740
DCUN1D5
DCN1-like protein.
      
 0.740
NCK2
Cytoplasmic protein.
   
 
 0.714
PARVG
Calponin-homology (CH) domain-containing protein.
   
 
 0.694
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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