STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGBD2PiggyBac transposable element derived 2. (591 aa)    
Predicted Functional Partners:
ZBED8
Zinc finger BED-type containing 8.
      
 0.655
ZNF862
Zinc finger protein 862.
  
   
 0.644
PGBD5
PiggyBac transposable element-derived protein 5.
    
 
 0.600
GNL1
CP-type G domain-containing protein.
    
 
 0.581
ZBED1
Zinc finger BED domain-containing protein 1.
    
 
 0.580
POGK
Pogo transposable element with KRAB domain isoform X1.
      
 0.577
BET1L
t-SNARE coiled-coil homology domain-containing protein.
      
 0.575
THAP9
THAP domain containing 9.
      
 0.570
LOC100514009
Histone-lysine N-methyltransferase SETMAR isoform 1.
   
 
 0.558
CHML
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
      
 0.531
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.