STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDH20Protocadherin-20. (952 aa)    
Predicted Functional Partners:
EGFL8
Epidermal growth factor-like protein 8.
      
 0.605
BRICD5
BRICHOS domain containing 5.
      
 0.576
SCAPER
S phase cyclin A-associated protein in the endoplasmic reticulum isoform X1.
      
 0.571
CENPA
Centromere protein A.
      
 0.558
TTC6
TPR_REGION domain-containing protein.
   
  
 0.528
RAB9B
RAB9B, member RAS oncogene family.
      
 0.516
ZPLD1
Zona pellucida like domain containing 1.
      
 0.515
DDO
D-aspartate oxidase; Selectively catalyzes the oxidative deamination of D- aspartate and its N-methylated derivative, N-methyl D-aspartate. Belongs to the DAMOX/DASOX family.
      
 0.515
B3GNT7
Hexosyltransferase.
    
 
 0.513
RAB33A
RAB33A, member RAS oncogene family.
      
 0.510
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.