STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERPINB9SERPIN domain-containing protein; Belongs to the serpin family. (495 aa)    
Predicted Functional Partners:
LOC100154047
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.917
SERPINB13
Serpin family B member 13; Belongs to the serpin family.
  
  
0.906
SERPINB10
SERPIN domain-containing protein; Belongs to the serpin family.
  
  
 
0.904
PPGRP-S
Uncharacterized protein.
      
 0.662
SLC4A9
Anion exchange protein.
      
 0.636
DUOXA2
Uncharacterized protein.
      
 0.496
PIP
Uncharacterized protein.
      
 0.477
RBM4B
RNA-binding protein 4B; Required for the translational activation of PER1 mRNA in response to circadian clock. Binds directly to the 3'-UTR of the PER1 mRNA (By similarity).
      
 0.473
TRMT2A
tRNA methyltransferase 2 homolog A; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
      
 0.452
SLC14A1
Urea transporter; Belongs to the urea transporter family.
      
 0.428
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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