STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C18orf54Lung adenoma susceptibility protein 2 isoform X1. (531 aa)    
Predicted Functional Partners:
C3orf14
Chromosome 3 open reading frame 14.
      
 0.794
RIBC2
RIB43A-like with coiled-coils protein 2.
      
 0.770
CCDC77
Coiled-coil domain-containing protein 77 isoform a.
      
 0.765
DONSON
Protein downstream neighbor of Son.
      
 0.695
ZNF367
Zinc finger protein 367.
      
 0.680
MGME1
Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity but is also capable of endoduclease activity on linear substrates. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair, possibly via the processing of displaced DNA containing Okazaki fragments during RNA- primed DNA synthesis on the lagging strand or via processing of DNA flaps during long-patch base excision repair; Belongs to the MGME1 family.
      
 0.671
CARNMT1
Carnosine N-methyltransferase isoform 1.
      
 0.578
C9orf40
Chromosome 9 open reading frame 40.
      
 0.578
CCDC150
Coiled-coil domain containing 150.
      
 0.574
NEMP1
Nuclear envelope integral membrane protein 1 isoform a.
      
 0.570
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.