STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSI1Musashi RNA binding protein 1. (436 aa)    
Predicted Functional Partners:
ZC3H14
Zinc finger CCCH-type containing 14.
    
 
 0.760
LRIG1
Leucine rich repeats and immunoglobulin like domains 1.
      
 0.666
CSTF2
Cleavage stimulation factor subunit 2.
  
 
 
 0.664
CSTF2T
Cleavage stimulation factor subunit 2 tau variant.
  
 
 
 0.659
OLFM4
Olfactomedin 4.
      
 0.611
LGR5
Leucine-rich repeat-containing G-protein coupled receptor 5 isoform 1.
      
 0.611
TNPO1
Transportin 1.
   
 
 0.592
SRSF2
Serine/arginine-rich splicing factor 2; Necessary for the splicing of pre-mRNA. It is required for formation of the earliest ATP-dependent splicing complex and interacts with spliceosomal components bound to both the 5'- and 3'-splice sites during spliceosome assembly. It also is required for ATP-dependent interactions of both U1 and U2 snRNPs with pre-mRNA. Interacts with other spliceosomal components, via the RS domains, to form a bridge between the 5'- and 3'-splice site binding components, U1 snRNP and U2AF. Binds to purine-rich RNA sequences, either 5'-AGSAGAGTA-3' (S=C or G) or 5 [...]
  
  
 0.582
SMOC2
SPARC related modular calcium binding 2.
   
  
 0.580
BMI1
RING-type domain-containing protein.
      
 0.555
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.