STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC33A1Solute carrier family 33 member 1. (751 aa)    
Predicted Functional Partners:
ST8SIA5
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5; Belongs to the glycosyltransferase 29 family.
     
 0.904
B4GALNT1
Beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X5.
     
  0.900
DNAJB9
DnaJ heat shock protein family (Hsp40) member B9.
   
 
 0.823
MID2
Midline 2.
      
 0.768
ZNF280D
Zinc finger protein 280D isoform X3.
    
 
 0.765
POLR3F
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
      
 0.718
PPCS
Phosphopantothenoylcysteine synthetase.
 
    
 0.710
FARP1
FERM, ARH/RhoGEF and pleckstrin domain protein 1.
      
 0.708
NIPA1
NIPA magnesium transporter 1.
   
  
 0.703
A0A287A5K3_PIG
Uncharacterized protein.
   
  
 0.649
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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