STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCN6Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (190 aa)    
Predicted Functional Partners:
LCN8
Lipocalin 8; Belongs to the calycin superfamily. Lipocalin family.
 
 
  
 0.897
LCN9
Lipocalin 9; Belongs to the calycin superfamily. Lipocalin family.
   
  
 0.823
LCN10
Lipocalin 10; Belongs to the calycin superfamily. Lipocalin family.
   
  
0.673
DEFB128
Beta-defensin; Has antibacterial activity; Belongs to the beta-defensin family.
      
 0.601
ADGRG2
Adhesion G protein-coupled receptor G2; Belongs to the G-protein coupled receptor 2 family.
      
 0.594
OBP2B
Lipocalin-1; Could play a role in taste reception. Could be necessary for the concentration and delivery of sapid molecules in the gustatory system. Can bind various ligands, with chemical structures ranging from lipids and retinoids to the macrocyclic antibiotic rifampicin and even to microbial siderophores. Exhibits an extremely wide ligand pocket (By similarity).
   
  
 0.577
TEDDM1
Transmembrane epididymal protein 1.
      
 0.572
LCN12
Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family.
      
 0.572
SIAE
Sialate O-acetylesterase isoform 1.
      
 0.560
CDH7
Cadherin-7 isoform 1 preproprotein; Cadherins are calcium-dependent cell adhesion proteins.
    
 
 0.556
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.