STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBXN4UBX domain-containing protein 4. (508 aa)    
Predicted Functional Partners:
UBXN6
UBX domain protein 6.
    
 0.998
VCP
Transitional endoplasmic reticulum ATPase; Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process. The ternary complex containing UFD1, VCP and NPLOC4 binds ubiquitinated proteins and is neces [...]
   
 0.997
UBXN1
UBX domain protein 1.
     
0.955
UBXN8
UBX domain-containing protein 8 isoform 1.
   
 
 0.952
UBXN2A
UBX domain protein 2A.
    
 0.952
NSFL1C
NSFL1 cofactor.
    
 0.930
GCC2
GRIP and coiled-coil domain containing 2.
   
  
 0.802
ASPSCR1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 
 0.735
SPATA5L1
Spermatogenesis-associated protein 5-like protein 1 isoform 1.
   
 
 0.670
SPATA5
Uncharacterized protein.
   
 
 0.670
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.