STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX6LIM homeobox 6. (392 aa)    
Predicted Functional Partners:
DLX1
Homeobox protein DLX-1 isoform 1.
   
  
 0.818
DLX2
Distal-less homeobox 2.
   
  
 0.729
PAX6
Paired box 6.
   
 
 0.679
DLX5
Homeobox protein DLX-5.
   
  
 0.675
LDB1
LID domain-containing protein.
    
 
 0.671
NKX2-1
NK2 homeobox 1.
   
 
 0.645
SOX6
SRY-box transcription factor 6.
    
 
 0.638
PAX9
Paired box 9.
   
  
 0.601
PVALB
Parvalbumin alpha; Belongs to the parvalbumin family.
    
 
 0.593
NPAS1
Neuronal PAS domain protein 1.
    
 
 0.577
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.