STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS50VPS50 subunit of EARP/GARPII complex. (990 aa)    
Predicted Functional Partners:
VPS51
VPS51 subunit of GARP complex.
    
 0.991
VPS53
Vacuolar protein sorting-associated protein 53 homolog isoform 1.
    
 0.987
VPS52
VPS52 subunit of GARP complex.
   
 0.944
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 0.880
VPS54
Vacuolar protein sorting-associated protein 54 isoform 1.
   
 
 0.856
CCDC186
Coiled-coil domain containing 186.
      
 0.645
RBM26
RNA binding motif protein 26.
      
 0.590
PCED1A
PC-esterase domain containing 1A.
      
 0.586
TOM1L2
Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family.
      
 0.573
CCDC138
Coiled-coil domain-containing protein 138 isoform 1.
      
 0.572
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.