TRIM15 protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRIM15

Tripartite motif-containing protein 15; Belongs to the TRIM/RBCC family. (486 aa)

Predicted Functional Partners:

OR12D3

0.775

FBXO9

0.674

TRIM47

0.646

INTS6

0.635

PIP5K1A

0.628

PIGK

0.627

ST6GALNAC5

0.621

PPT2

0.595

CHAF1B

0.568

ARID5A

0.563

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID5A	PIP5K1A	ENSSSCP00000046864	ENSSSCP00000068921	AT-rich interaction domain 5A.	Phosphatidylinositol-4-phosphate 5-kinase type 1 alpha.	0.483
ARID5A	TRIM15	ENSSSCP00000046864	ENSSSCP00000062771	AT-rich interaction domain 5A.	Tripartite motif-containing protein 15; Belongs to the TRIM/RBCC family.	0.563
CHAF1B	TRIM15	ENSSSCP00000012836	ENSSSCP00000062771	Chromatin assembly factor 1 subunit B.	Tripartite motif-containing protein 15; Belongs to the TRIM/RBCC family.	0.568
FBXO9	PIGK	ENSSSCP00000070521	ENSSSCP00000042340	F-box domain-containing protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein (By similarity).	0.580
FBXO9	ST6GALNAC5	ENSSSCP00000070521	ENSSSCP00000065151	F-box domain-containing protein.	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5; Belongs to the glycosyltransferase 29 family.	0.592
FBXO9	TRIM15	ENSSSCP00000070521	ENSSSCP00000062771	F-box domain-containing protein.	Tripartite motif-containing protein 15; Belongs to the TRIM/RBCC family.	0.674
INTS6	OR12D3	ENSSSCP00000031423	ENSSSCP00000024620	Integrator complex subunit 6.	Olfactory receptor.	0.748
INTS6	PIGK	ENSSSCP00000031423	ENSSSCP00000042340	Integrator complex subunit 6.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein (By similarity).	0.670
INTS6	ST6GALNAC5	ENSSSCP00000031423	ENSSSCP00000065151	Integrator complex subunit 6.	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5; Belongs to the glycosyltransferase 29 family.	0.622
INTS6	TRIM15	ENSSSCP00000031423	ENSSSCP00000062771	Integrator complex subunit 6.	Tripartite motif-containing protein 15; Belongs to the TRIM/RBCC family.	0.635
OR12D3	INTS6	ENSSSCP00000024620	ENSSSCP00000031423	Olfactory receptor.	Integrator complex subunit 6.	0.748
OR12D3	PPT2	ENSSSCP00000024620	ENSSSCP00000029758	Olfactory receptor.	Palmitoyl-protein thioesterase 2.	0.757
OR12D3	TRIM15	ENSSSCP00000024620	ENSSSCP00000062771	Olfactory receptor.	Tripartite motif-containing protein 15; Belongs to the TRIM/RBCC family.	0.775
PIGK	FBXO9	ENSSSCP00000042340	ENSSSCP00000070521	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein (By similarity).	F-box domain-containing protein.	0.580
PIGK	INTS6	ENSSSCP00000042340	ENSSSCP00000031423	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein (By similarity).	Integrator complex subunit 6.	0.670
PIGK	ST6GALNAC5	ENSSSCP00000042340	ENSSSCP00000065151	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein (By similarity).	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5; Belongs to the glycosyltransferase 29 family.	0.542
PIGK	TRIM15	ENSSSCP00000042340	ENSSSCP00000062771	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein (By similarity).	Tripartite motif-containing protein 15; Belongs to the TRIM/RBCC family.	0.627
PIP5K1A	ARID5A	ENSSSCP00000068921	ENSSSCP00000046864	Phosphatidylinositol-4-phosphate 5-kinase type 1 alpha.	AT-rich interaction domain 5A.	0.483
PIP5K1A	TRIM15	ENSSSCP00000068921	ENSSSCP00000062771	Phosphatidylinositol-4-phosphate 5-kinase type 1 alpha.	Tripartite motif-containing protein 15; Belongs to the TRIM/RBCC family.	0.628
PPT2	OR12D3	ENSSSCP00000029758	ENSSSCP00000024620	Palmitoyl-protein thioesterase 2.	Olfactory receptor.	0.757