STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM13E3 ubiquitin-protein ligase TRIM13 isoform 2. (407 aa)    
Predicted Functional Partners:
SPRYD7
B30.2/SPRY domain-containing protein.
   
 
 0.889
TRIM44
Tripartite motif containing 44.
    
 
 0.669
ALPK1
Alpha kinase 1.
      
 0.617
KCTD13
BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1.
    
 
 0.614
TRIM37
Tripartite motif containing 37.
    
 
 0.580
LRSAM1
Leucine rich repeat and sterile alpha motif containing 1.
    
 
 0.577
SGCZ
Sarcoglycan zeta.
      
 0.574
XPNPEP3
Putative Xaa-Pro aminopeptidase 3 isoform X1.
      
 0.571
RNF166
Ring finger protein 166.
      
 0.571
TRIM16
Uncharacterized protein.
    
 
 0.570
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.