STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNFT2Ring finger protein, transmembrane 2. (489 aa)    
Predicted Functional Partners:
MARCHF3
RING-CH-type domain-containing protein.
      
 0.561
RAPGEFL1
Rap guanine nucleotide exchange factor like 1.
      
 0.529
ARHGAP42
Rho GTPase activating protein 42.
      
 0.517
MARCHF2
Membrane associated ring-CH-type finger 2.
      
 0.515
RSPRY1
RING finger and SPRY domain-containing protein 1 isoform 1.
      
 0.514
AREL1
Apoptosis resistant E3 ubiquitin protein ligase 1.
      
 0.514
CGRRF1
Cell growth regulator with RING finger domain protein 1 isoform X1.
      
 0.510
RNF170
E3 ubiquitin-protein ligase RNF170 isoform X1.
      
 0.509
GPRIN1
G protein regulated inducer of neurite outgrowth 1.
      
 0.507
RNF13
Ring finger protein 13.
      
 0.507
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.