PCBP4 protein (Sus scrofa) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

PCBP4

Poly(rC) binding protein 4. (404 aa)

Predicted Functional Partners:

FHL1

0.611

RPL38

0.598

RPS28

0.572

BCAP31

0.562

NELFCD

0.557

RPL29

0.550

WEE1

0.529

PRPF8

0.500

SESN1

0.495

HUS1

0.491

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCAP31	NELFCD	ENSSSCP00000029439	ENSSSCP00000033095	B-cell receptor-associated protein 31 isoform b.	Negative elongation factor D; Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II (By similarity). The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex (By similarity).	0.406
BCAP31	PCBP4	ENSSSCP00000029439	ENSSSCP00000065847	B-cell receptor-associated protein 31 isoform b.	Poly(rC) binding protein 4.	0.562
FHL1	NELFCD	ENSSSCP00000030686	ENSSSCP00000033095	Four and a half LIM domains 1.	Negative elongation factor D; Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II (By similarity). The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex (By similarity).	0.400
FHL1	PCBP4	ENSSSCP00000030686	ENSSSCP00000065847	Four and a half LIM domains 1.	Poly(rC) binding protein 4.	0.611
FHL1	RPL38	ENSSSCP00000030686	ENSSSCP00000042077	Four and a half LIM domains 1.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.400
HUS1	PCBP4	ENSSSCP00000040283	ENSSSCP00000065847	Checkpoint protein; Belongs to the HUS1 family.	Poly(rC) binding protein 4.	0.491
NELFCD	BCAP31	ENSSSCP00000033095	ENSSSCP00000029439	Negative elongation factor D; Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II (By similarity). The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex (By similarity).	B-cell receptor-associated protein 31 isoform b.	0.406
NELFCD	FHL1	ENSSSCP00000033095	ENSSSCP00000030686	Negative elongation factor D; Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II (By similarity). The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex (By similarity).	Four and a half LIM domains 1.	0.400
NELFCD	PCBP4	ENSSSCP00000033095	ENSSSCP00000065847	Negative elongation factor D; Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II (By similarity). The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex (By similarity).	Poly(rC) binding protein 4.	0.557
NELFCD	RPL38	ENSSSCP00000033095	ENSSSCP00000042077	Negative elongation factor D; Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II (By similarity). The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex (By similarity).	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.410
PCBP4	BCAP31	ENSSSCP00000065847	ENSSSCP00000029439	Poly(rC) binding protein 4.	B-cell receptor-associated protein 31 isoform b.	0.562
PCBP4	FHL1	ENSSSCP00000065847	ENSSSCP00000030686	Poly(rC) binding protein 4.	Four and a half LIM domains 1.	0.611
PCBP4	HUS1	ENSSSCP00000065847	ENSSSCP00000040283	Poly(rC) binding protein 4.	Checkpoint protein; Belongs to the HUS1 family.	0.491
PCBP4	NELFCD	ENSSSCP00000065847	ENSSSCP00000033095	Poly(rC) binding protein 4.	Negative elongation factor D; Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II (By similarity). The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex (By similarity).	0.557
PCBP4	PRPF8	ENSSSCP00000065847	ENSSSCP00000018877	Poly(rC) binding protein 4.	Pre-mRNA processing factor 8.	0.500
PCBP4	RPL29	ENSSSCP00000065847	ENSSSCP00000045632	Poly(rC) binding protein 4.	60S ribosomal protein L29; Component of the large ribosomal subunit. Belongs to the eukaryotic ribosomal protein eL29 family.	0.550
PCBP4	RPL38	ENSSSCP00000065847	ENSSSCP00000042077	Poly(rC) binding protein 4.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.598
PCBP4	RPS28	ENSSSCP00000065847	ENSSSCP00000014450	Poly(rC) binding protein 4.	40S ribosomal protein S28; Belongs to the eukaryotic ribosomal protein eS28 family.	0.572
PCBP4	SESN1	ENSSSCP00000065847	ENSSSCP00000064791	Poly(rC) binding protein 4.	Sestrin 1.	0.495
PCBP4	WEE1	ENSSSCP00000065847	ENSSSCP00000014257	Poly(rC) binding protein 4.	Wee1-like protein kinase.	0.529