STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A1Collagen type VI alpha 1 chain. (1028 aa)    
Predicted Functional Partners:
COL6A2
Collagen type VI alpha 2 chain.
  
0.994
COL1A1
Collagen type I alpha 1 chain.
  
0.968
ITGAV
Integrin subunit alpha V; Belongs to the integrin alpha chain family.
    
 0.926
GP6
Ig-like domain-containing protein.
     
 0.915
COL3A1
Collagen alpha-1(III) chain preproprotein.
  
0.890
COL6A3
Collagen type VI alpha 3 chain.
   
0.887
ITGA8
Integrin subunit alpha 8; Belongs to the integrin alpha chain family.
    
 0.870
COL1A2
Fibrillar collagen NC1 domain-containing protein.
  
0.866
ITGA5
Integrin subunit alpha 5; Belongs to the integrin alpha chain family.
    
 0.849
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.827
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.