STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCOF1Treacle ribosome biogenesis factor 1. (1399 aa)    
Predicted Functional Partners:
CCDC86
Uncharacterized protein.
   
  
 0.626
PAX3
Paired box protein Pax-3 isoform PAX3e.
    
 
 0.589
PRRC2A
BAT2_N domain-containing protein.
   
  
 0.563
ALYREF
Aly/REF export factor.
    
 
 0.560
BAZ1B
Bromodomain adjacent to zinc finger domain 1B.
    
 
 0.554
H1-4
Histone cluster 1 H1 family member e.
    
 
 0.544
EMG1
Ribosomal RNA small subunit methyltransferase NEP1 isoform 1.
   
  
 0.528
KBTBD8
Kelch repeat and BTB domain-containing protein 8 isoform X1.
    
 
 0.518
CAPZA2
F-actin-capping protein subunit alpha-2; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments (By similarity).
    
 
 0.508
UTP18
U3 small nucleolar RNA-associated protein 18 homolog.
    
 
 0.505
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.