STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC28AUncharacterized protein. (185 aa)    
Predicted Functional Partners:
ECT2L
Epithelial cell transforming 2 like.
 
    
 0.827
TMEM159
Transmembrane protein 159.
      
 0.514
LOC100521350
Uncharacterized protein.
      
 0.513
DUSP19
Dual specificity protein phosphatase 19 isoform X2; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
      
 0.508
PRPSAP1
Phosphoribosyl pyrophosphate synthetase associated protein 1.
      
 0.504
UBFD1
Ubiquitin family domain containing 1.
      
 0.503
RXYLT1
UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase isoform 1.
      
 0.487
TIPRL
TOR signaling pathway regulator.
      
 0.487
SEC14L1
SEC14 like lipid binding 1.
      
 0.487
RNF145
Ring finger protein 145.
      
 0.470
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.