SERINC2 protein (Sus scrofa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SERINC2

Serine incorporator 2. (483 aa)

Predicted Functional Partners:

ADGB

0.853

MPZL2

0.849

GPN3

0.849

ICE2

0.785

MOSPD2

0.781

LGALS12

0.738

MRPS18B

0.723

ACSM4

0.609

ATP9A

0.582

GLB1L

0.570

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACSM4	ADGB	ENSSSCP00000027223	ENSSSCP00000004450	Acyl-CoA synthetase medium chain family member 4.	Ras-related protein Rab-32; Belongs to the peptidase C2 family.	0.728
ACSM4	GPN3	ENSSSCP00000027223	ENSSSCP00000061970	Acyl-CoA synthetase medium chain family member 4.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.731
ACSM4	MOSPD2	ENSSSCP00000027223	ENSSSCP00000028805	Acyl-CoA synthetase medium chain family member 4.	Motile sperm domain-containing protein 2 isoform 1.	0.670
ACSM4	MPZL2	ENSSSCP00000027223	ENSSSCP00000016014	Acyl-CoA synthetase medium chain family member 4.	Myelin protein zero-like protein 2.	0.731
ACSM4	MRPS18B	ENSSSCP00000027223	ENSSSCP00000024944	Acyl-CoA synthetase medium chain family member 4.	28S ribosomal protein S18b, mitochondrial; Belongs to the bacterial ribosomal protein bS18 family. Mitochondrion-specific ribosomal protein mS40 subfamily.	0.556
ACSM4	SERINC2	ENSSSCP00000027223	ENSSSCP00000070585	Acyl-CoA synthetase medium chain family member 4.	Serine incorporator 2.	0.609
ADGB	ACSM4	ENSSSCP00000004450	ENSSSCP00000027223	Ras-related protein Rab-32; Belongs to the peptidase C2 family.	Acyl-CoA synthetase medium chain family member 4.	0.728
ADGB	GPN3	ENSSSCP00000004450	ENSSSCP00000061970	Ras-related protein Rab-32; Belongs to the peptidase C2 family.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.900
ADGB	MOSPD2	ENSSSCP00000004450	ENSSSCP00000028805	Ras-related protein Rab-32; Belongs to the peptidase C2 family.	Motile sperm domain-containing protein 2 isoform 1.	0.868
ADGB	MPZL2	ENSSSCP00000004450	ENSSSCP00000016014	Ras-related protein Rab-32; Belongs to the peptidase C2 family.	Myelin protein zero-like protein 2.	0.900
ADGB	MRPS18B	ENSSSCP00000004450	ENSSSCP00000024944	Ras-related protein Rab-32; Belongs to the peptidase C2 family.	28S ribosomal protein S18b, mitochondrial; Belongs to the bacterial ribosomal protein bS18 family. Mitochondrion-specific ribosomal protein mS40 subfamily.	0.829
ADGB	SERINC2	ENSSSCP00000004450	ENSSSCP00000070585	Ras-related protein Rab-32; Belongs to the peptidase C2 family.	Serine incorporator 2.	0.853
ATP9A	SERINC2	ENSSSCP00000062604	ENSSSCP00000070585	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Serine incorporator 2.	0.582
GLB1L	SERINC2	ENSSSCP00000017176	ENSSSCP00000070585	Galactosidase beta 1 like; Belongs to the glycosyl hydrolase 35 family.	Serine incorporator 2.	0.570
GPN3	ACSM4	ENSSSCP00000061970	ENSSSCP00000027223	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Acyl-CoA synthetase medium chain family member 4.	0.731
GPN3	ADGB	ENSSSCP00000061970	ENSSSCP00000004450	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Ras-related protein Rab-32; Belongs to the peptidase C2 family.	0.900
GPN3	MOSPD2	ENSSSCP00000061970	ENSSSCP00000028805	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Motile sperm domain-containing protein 2 isoform 1.	0.877
GPN3	MPZL2	ENSSSCP00000061970	ENSSSCP00000016014	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Myelin protein zero-like protein 2.	0.902
GPN3	MRPS18B	ENSSSCP00000061970	ENSSSCP00000024944	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	28S ribosomal protein S18b, mitochondrial; Belongs to the bacterial ribosomal protein bS18 family. Mitochondrion-specific ribosomal protein mS40 subfamily.	0.842
GPN3	SERINC2	ENSSSCP00000061970	ENSSSCP00000070585	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Serine incorporator 2.	0.849