STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDK5RAP3CDK5 regulatory subunit associated protein 3. (513 aa)    
Predicted Functional Partners:
UFL1
E3 UFM1-protein ligase 1.
   
 
 0.944
DDRGK1
DDRGK domain-containing protein 1.
    
 
 0.918
UFSP2
UFM1 specific peptidase 2.
   
  
 0.802
UFC1
Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.
   
 
 0.800
UFSP1
UFM1 specific peptidase 1 (inactive).
   
  
 0.776
UBA5
Ubiquitin like modifier activating enzyme 5.
      
 0.742
TMEM150A
Transmembrane protein 150A.
      
 0.729
SLC25A44
Solute carrier family 25 member 44; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.729
TMBIM4
Uncharacterized protein; Belongs to the BI1 family.
      
 0.687
UFM1
Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.
    
 
 0.656
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.