STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynB2Xylan 1,4-beta-xylosidase. (560 aa)    
Predicted Functional Partners:
SHL80679.1
O-Glycosyl hydrolase.
  
  
  0.745
SHL89188.1
Oligosaccharide reducing-end xylanase.
 
  
  0.608
SHM03853.1
Protein of unknown function.
  
  
  0.561
SHL89663.1
Endo-1,4-beta-xylanase.
     
 0.512
xynA
Endo-1,4-beta-xylanase.
     
 0.512
yesW_1
Rhamnogalacturonan endolyase.
  
  
  0.509
SHL53826.1
Right handed beta helix region.
     
 0.487
SHM08286.1
Polysaccharide export outer membrane protein.
 
    0.451
wza
Protein involved in gliding motility EpsA.
 
    0.448
SHL99083.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
    0.447
Your Current Organism:
Flavobacterium flevense
NCBI taxonomy Id: 983
Other names: ATCC 27944, CCUG 14832, CIP 104740, Cytophaga flevensis, F. flevense, IFO 14960, JCM 21143, LMG 8328, LMG:8328, NBRC 14960
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