STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL47955.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (412 aa)    
Predicted Functional Partners:
SHL47982.1
Tryptophan 2,3-dioxygenase apoenzyme.
       0.651
SHL47991.1
Protein of unknown function.
       0.651
SHL83341.1
Peptidase family M23.
  
     0.552
SHM10208.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
 
 0.474
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.462
SHL47893.1
Rare lipoprotein A; Belongs to the RlpA family.
 
 
 
 0.407
Your Current Organism:
Flavobacterium flevense
NCBI taxonomy Id: 983
Other names: ATCC 27944, CCUG 14832, CIP 104740, Cytophaga flevensis, F. flevense, IFO 14960, JCM 21143, LMG 8328, LMG:8328, NBRC 14960
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.