STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL49942.1Regulator of sigma E protease. (447 aa)    
Predicted Functional Partners:
uppS
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.720
bamA
Beta-barrel assembly machine subunit BamA.
 
  
 0.703
gltA_1
Glutamate synthase (NADH) large subunit.
  
  
 0.695
SHL74678.1
Outer membrane protein assembly factor BamA.
  
  
 0.578
SHM18123.1
Surface antigen.
  
  
 0.578
secDF
Protein translocase subunit secF /protein translocase subunit secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
  
 0.570
SHL45509.1
CarboxypepD_reg-like domain-containing protein.
  
  
 0.548
SHL49923.1
2,4-dienoyl-CoA reductase.
       0.522
SHL36161.1
Periplasmic chaperone for outer membrane proteins Skp.
 
    0.513
yidC
Protein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
    0.506
Your Current Organism:
Flavobacterium flevense
NCBI taxonomy Id: 983
Other names: ATCC 27944, CCUG 14832, CIP 104740, Cytophaga flevensis, F. flevense, IFO 14960, JCM 21143, LMG 8328, LMG:8328, NBRC 14960
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