STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL53000.1Transcriptional regulator, AraC family. (284 aa)    
Predicted Functional Partners:
SHL53036.1
Putative efflux protein, MATE family.
 
     0.598
SHL29083.1
Hypothetical protein.
  
     0.575
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.562
SHL93018.1
Family of unknown function.
  
     0.559
SHL53049.1
Putative membrane protein.
       0.550
SHL71171.1
Aspartyl protease.
  
     0.548
SHL71549.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.546
SHL53814.1
AraC-type DNA-binding protein.
  
     0.533
SHM07332.1
Hypothetical protein.
  
     0.532
SHL27507.1
Protein of unknown function.
  
     0.525
Your Current Organism:
Flavobacterium flevense
NCBI taxonomy Id: 983
Other names: ATCC 27944, CCUG 14832, CIP 104740, Cytophaga flevensis, F. flevense, IFO 14960, JCM 21143, LMG 8328, LMG:8328, NBRC 14960
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.