Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL31045.1 | SHM08432.1 | SAMN05443543_101266 | SAMN05443543_11073 | Hypothetical protein. | Amino acid adenylation domain-containing protein. | 0.982 |
SHL31045.1 | serS | SAMN05443543_101266 | SAMN05443543_102527 | Hypothetical protein. | seryl-tRNA synthetase. | 0.760 |
SHM08432.1 | SHL31045.1 | SAMN05443543_11073 | SAMN05443543_101266 | Amino acid adenylation domain-containing protein. | Hypothetical protein. | 0.982 |
SHM08432.1 | SHM12983.1 | SAMN05443543_11073 | SAMN05443543_11262 | Amino acid adenylation domain-containing protein. | Acyl carrier protein. | 0.982 |
SHM08432.1 | acpP | SAMN05443543_11073 | SAMN05443543_102150 | Amino acid adenylation domain-containing protein. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.982 |
SHM08432.1 | serS | SAMN05443543_11073 | SAMN05443543_102527 | Amino acid adenylation domain-containing protein. | seryl-tRNA synthetase. | 0.789 |
SHM12983.1 | SHM08432.1 | SAMN05443543_11262 | SAMN05443543_11073 | Acyl carrier protein. | Amino acid adenylation domain-containing protein. | 0.982 |
SHM12983.1 | serS | SAMN05443543_11262 | SAMN05443543_102527 | Acyl carrier protein. | seryl-tRNA synthetase. | 0.760 |
acpP | SHM08432.1 | SAMN05443543_102150 | SAMN05443543_11073 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Amino acid adenylation domain-containing protein. | 0.982 |
acpP | serS | SAMN05443543_102150 | SAMN05443543_102527 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | seryl-tRNA synthetase. | 0.760 |
alaS | glyS | SAMN05443543_101228 | SAMN05443543_102143 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.675 |
alaS | lysS | SAMN05443543_101228 | SAMN05443543_101202 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.653 |
alaS | pheS | SAMN05443543_101228 | SAMN05443543_102201 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.571 |
alaS | rsmA | SAMN05443543_101228 | SAMN05443543_102531 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.485 |
alaS | serS | SAMN05443543_101228 | SAMN05443543_102527 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | seryl-tRNA synthetase. | 0.780 |
alaS | valS | SAMN05443543_101228 | SAMN05443543_108210 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.853 |
glyS | alaS | SAMN05443543_102143 | SAMN05443543_101228 | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.675 |
glyS | lysS | SAMN05443543_102143 | SAMN05443543_101202 | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.607 |
glyS | pheS | SAMN05443543_102143 | SAMN05443543_102201 | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.411 |
glyS | serS | SAMN05443543_102143 | SAMN05443543_102527 | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | seryl-tRNA synthetase. | 0.739 |
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