STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL71693.1Predicted ABC-type ATPase. (191 aa)    
Predicted Functional Partners:
SHL71661.1
Hypothetical protein.
       0.794
SHL71729.1
Hypothetical protein.
       0.567
SHL55026.1
Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family.
  
     0.518
SHL67529.1
Helix-turn-helix domain-containing protein.
  
 
   0.476
SHL51250.1
Helix-turn-helix.
  
 
   0.474
SHL29002.1
Helix-turn-helix.
    
   0.406
SHL30628.1
Helix-turn-helix.
    
   0.406
SHL30793.1
Transcriptional regulator, XRE family with cupin sensor.
    
   0.406
SHL38403.1
Transcriptional regulator.
    
   0.406
SHL48514.1
Transcriptional regulator, XRE family with cupin sensor.
    
   0.406
Your Current Organism:
Flavobacterium flevense
NCBI taxonomy Id: 983
Other names: ATCC 27944, CCUG 14832, CIP 104740, Cytophaga flevensis, F. flevense, IFO 14960, JCM 21143, LMG 8328, LMG:8328, NBRC 14960
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.