STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynD_2Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family. (454 aa)    
Predicted Functional Partners:
xynD_3
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
 
  
 
0.924
SHL89327.1
Glycosyl-hydrolase 97 C-terminal, oligomerisation.
 
  
  0.840
SHL89150.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
  0.805
SHM05780.1
alpha-N-arabinofuranosidase.
  
 
  0.729
SHL35945.1
Glycosyl hydrolases family 43.
  
  
 
0.722
SHL71465.1
Glycosyl hydrolases family 43.
  
  
 
0.676
SHL80600.1
Glycosyl hydrolases family 43.
  
  
 
0.670
SHM05700.1
alpha-N-arabinofuranosidase.
   
 
  0.669
SHL89369.1
alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
  0.652
SHL89289.1
Protein of unknown function.
       0.651
Your Current Organism:
Flavobacterium flevense
NCBI taxonomy Id: 983
Other names: ATCC 27944, CCUG 14832, CIP 104740, Cytophaga flevensis, F. flevense, IFO 14960, JCM 21143, LMG 8328, LMG:8328, NBRC 14960
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