STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL94806.1DoxX-like family protein. (126 aa)    
Predicted Functional Partners:
SHL94782.1
Hypothetical protein.
 
     0.866
SHL94823.1
Glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase.
       0.778
SHL94878.1
Transcriptional regulator, AraC family with amidase-like domain.
 
     0.622
SHL62555.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
 
     0.568
SHL94844.1
PhnB protein.
 
    0.551
SHL62580.1
Activator of Hsp90 ATPase homolog 1-like protein.
  
     0.431
SHL61304.1
Dihydrofolate reductase.
  
    0.428
SHL66015.1
RNA polymerase, alpha chain C terminal domain.
 
     0.427
SHL62602.1
Hypothetical protein.
  
     0.424
SHM02550.1
Gas vesicle protein.
  
     0.409
Your Current Organism:
Flavobacterium flevense
NCBI taxonomy Id: 983
Other names: ATCC 27944, CCUG 14832, CIP 104740, Cytophaga flevensis, F. flevense, IFO 14960, JCM 21143, LMG 8328, LMG:8328, NBRC 14960
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