STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM04724.1Hypothetical protein. (130 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
    
  0.954
SHL28389.1
Hypothetical protein.
  
     0.771
SHL83054.1
Hypothetical protein.
  
     0.761
SHL64295.1
Protein of unknown function.
  
     0.755
mvaK
Mevalonate kinase.
  
     0.754
SHL80868.1
Hypothetical protein.
  
     0.751
gldN
Protein involved in gliding motility GldN.
  
     0.731
SHL32526.1
Hypothetical protein.
  
     0.723
SHL55332.1
Putative hemolysin.
  
     0.720
SHL29668.1
Putative porin.
 
     0.714
Your Current Organism:
Flavobacterium flevense
NCBI taxonomy Id: 983
Other names: ATCC 27944, CCUG 14832, CIP 104740, Cytophaga flevensis, F. flevense, IFO 14960, JCM 21143, LMG 8328, LMG:8328, NBRC 14960
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.