STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM05675.1Arabinan endo-1,5-alpha-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family. (538 aa)    
Predicted Functional Partners:
SHM05659.1
Starch-binding associating with outer membrane.
 
  
  0.831
SHM05718.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
    0.717
SHM05634.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.708
SHM05700.1
alpha-N-arabinofuranosidase.
 
    0.658
yesW_1
Rhamnogalacturonan endolyase.
  
 
  0.632
SHM05757.1
Beta-xylosidase, GH43 family; Belongs to the glycosyl hydrolase 43 family.
  
     0.612
yesW_2
Rhamnogalacturonan endolyase.
  
 
  0.602
SHL55243.1
Beta-xylosidase, GH43 family; Belongs to the glycosyl hydrolase 43 family.
  
     0.578
SHL74098.1
Hypothetical protein.
 
     0.571
abnA
Arabinan endo-1,5-alpha-L-arabinosidase.
 
    
0.525
Your Current Organism:
Flavobacterium flevense
NCBI taxonomy Id: 983
Other names: ATCC 27944, CCUG 14832, CIP 104740, Cytophaga flevensis, F. flevense, IFO 14960, JCM 21143, LMG 8328, LMG:8328, NBRC 14960
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.