STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM21114.1Protein of unknown function. (145 aa)    
Predicted Functional Partners:
SHM21138.1
Cellulose biosynthesis protein BcsQ.
 
     0.948
SHM19983.1
Cellulose biosynthesis protein BcsQ.
 
     0.782
SHM21083.1
Hypothetical protein.
       0.781
SHM19704.1
Bacteroides conjugative transposon TraM protein.
  
     0.774
SHM22237.1
Bacteroides conjugative transposon TraM protein.
  
     0.774
SHM22697.1
Protein of unknown function.
  
     0.774
SHM22676.1
Helix-turn-helix domain-containing protein.
  
     0.773
SHM20009.1
Hypothetical protein.
  
     0.772
SHM21159.1
Hypothetical protein.
  
     0.772
SHM19784.1
Protein of unknown function.
 
     0.771
Your Current Organism:
Flavobacterium flevense
NCBI taxonomy Id: 983
Other names: ATCC 27944, CCUG 14832, CIP 104740, Cytophaga flevensis, F. flevense, IFO 14960, JCM 21143, LMG 8328, LMG:8328, NBRC 14960
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.