STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM21207.1TraM recognition site of TraD and TraG. (666 aa)    
Predicted Functional Partners:
SHM21187.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
     0.883
SHM21159.1
Hypothetical protein.
 
    0.862
SHM21232.1
Adenine-specific DNA methylase, N12 class.
 
     0.803
SHM19808.1
Bacteroides conjugation system ATPase, TraG family.
 
  
 0.787
SHM22339.1
Bacteroides conjugation system ATPase, TraG family.
 
  
 0.787
SHM19688.1
Bacteroides conjugative transposon TraN protein.
 
     0.777
SHM19745.1
Bacteroides conjugative transposon TraK protein.
 
     0.777
SHM19766.1
Bacteroides conjugative transposon TraJ protein.
 
     0.777
SHM22211.1
Bacteroides conjugative transposon TraN protein.
 
     0.777
SHM22276.1
Bacteroides conjugative transposon TraK protein.
 
     0.777
Your Current Organism:
Flavobacterium flevense
NCBI taxonomy Id: 983
Other names: ATCC 27944, CCUG 14832, CIP 104740, Cytophaga flevensis, F. flevense, IFO 14960, JCM 21143, LMG 8328, LMG:8328, NBRC 14960
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.