STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_09112Pre-mRNA splicing factor ATP-dependent RNA helicase prp16. (1274 aa)    
Predicted Functional Partners:
AG1IA_07306
Pre-mRNA splicing factor.
   
 0.999
AG1IA_03400
Pre-mRNA-splicing factor SLU7.
   
 0.999
AG1IA_05423
CWC25 domain-containing protein.
    
 0.996
AG1IA_01305
Uncharacterized protein.
   
 0.996
AG1IA_02282
rRNA primary transcript binding protein.
   
 0.990
AG1IA_04428
RNA recognition motif domain-containing protein.
    
  0.989
AG1IA_02136
Cell cycle control protein (Cwf22), putative.
   
 0.989
AG1IA_01292
CDC5 protein.
 
 
 0.988
AG1IA_02059
Pre-mRNA-splicing factor SYF2.
    
 0.988
AG1IA_04124
DEAD/DEAH box helicase, putative.
    
 
 0.986
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.