STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_07125DNA repair protein RAD1, putative. (954 aa)    
Predicted Functional Partners:
AG1IA_05065
Rad10 domain-containing protein.
   
 0.999
AG1IA_01044
DNA topoisomerase type I.
    
 0.988
AG1IA_01329
XPA_C domain-containing protein.
    
 0.986
AG1IA_00554
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
 0.983
AG1IA_03925
Ded81p.
  
 0.982
AG1IA_07773
TATA element modulatory factor 1 TATA binding domain-containing protein.
    
 0.970
AG1IA_01306
RecQ type DNA helicase Rqh1.
    
 0.970
AG1IA_02472
NPL4 protein.
   
 0.968
AG1IA_00650
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
 0.967
AG1IA_01442
ATP-dependent DNA helicase recQ.
   
 0.957
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.