STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_06697Valine-tRNA ligase. (639 aa)    
Predicted Functional Partners:
AG1IA_06699
Valine-tRNA ligase.
 
     0.929
AG1IA_06698
Valine-tRNA ligase.
 
     0.925
AG1IA_10375
Valine-tRNA ligase.
 
     0.924
AG1IA_04908
Elongation factor 1-gamma; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.923
AG1IA_09470
Tyrosyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.863
AG1IA_09455
Leucyl-tRNA synthetase.
   
 0.841
AG1IA_07509
Isoleucyl-tRNA synthetase.
  
 0.785
AG1IA_01613
Isoleucyl-tRNA synthetase.
  
 0.770
AG1IA_02803
Aspartyl-tRNA synthetase.
  
  
 0.767
ALA1
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.
  
  
 0.605
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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