STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_04928Ribosome biogenesis protein Sqt1. (453 aa)    
Predicted Functional Partners:
AG1IA_04190
Uncharacterized protein.
    
 
 0.985
AG1IA_06035
Glutamate-rich WD repeat-containing protein.
   
  
 0.890
AG1IA_08469
Fes1 domain-containing protein.
    
 
 0.834
AG1IA_08468
Uncharacterized protein.
    
 
 0.834
AG1IA_01600
54S ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.834
AG1IA_05981
U3 small nucleolar RNA-associated protein.
  
    0.778
AG1IA_02442
Uncharacterized protein.
    
 0.732
AG1IA_02621
CGI-48 family protein.
   
  
 0.701
AG1IA_07792
Ribosomal l10 domain-containing protein.
   
  
 0.656
AG1IA_04757
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.
   
  
 0.639
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.