STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_04579Sec39 domain-containing protein. (1500 aa)    
Predicted Functional Partners:
AG1IA_02316
Zw10 domain-containing protein.
    
 0.999
AG1IA_00238
SNARE protein syntaxin 18/UFE1.
    
 0.987
AG1IA_03240
Use1 domain-containing protein.
    
 0.986
AG1IA_05206
Sec20 domain-containing protein.
    
 0.904
AG1IA_00371
Protein transport protein Sec22; Belongs to the synaptobrevin family.
    
 0.899
AG1IA_06713
Pkinase domain-containing protein.
    
 0.893
AG1IA_06714
WaaY domain-containing protein.
    
 0.893
AG1IA_05770
Pleckstrin-like protein.
    
 0.893
AG1IA_07689
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
    
  0.839
AG1IA_04131
Vesicular-fusion protein SEC17.
    
 0.823
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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