STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_05087Splicing factor, CC1-like family protein. (399 aa)    
Predicted Functional Partners:
AG1IA_00716
RNA recognition motif domain-containing protein.
   
 0.950
AG1IA_01292
CDC5 protein.
   
 
 0.940
AG1IA_02282
rRNA primary transcript binding protein.
   
 
0.892
AG1IA_00785
Oxidoreductase; Belongs to the cytochrome b5 family.
 
      0.887
AG1IA_02466
Splicing factor 3B subunit 1.
   
 
 0.869
AG1IA_06977
CPSF A subunit region domain-containing protein.
    
 
 0.852
AG1IA_00691
SAP18 domain-containing protein.
    
 0.830
AG1IA_01478
G-patch domain-containing protein.
   
 0.820
AG1IA_05183
Splicing factor SF1.
   
 0.815
AG1IA_07306
Pre-mRNA splicing factor.
    
 0.811
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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