STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_02914RNA polymerase rpb8 domain-containing protein. (455 aa)    
Predicted Functional Partners:
AG1IA_09355
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.966
AG1IA_03279
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
  
 0.891
AG1IA_07678
Coproporphyrinogen III oxidase.
  
 0.865
AG1IA_07814
HEM4 domain-containing protein.
  
 
 0.842
AG1IA_05317
Siroheme synthase.
    
 0.815
AG1IA_05490
Glutamate synthase.
    
 0.808
AG1IA_00822
Adenosylhomocysteinase.
   
 
  0.718
AG1IA_01332
Biotin synthase.
  
 
 0.717
AG1IA_06513
Molybdenum cofactor synthesis-step 1 protein isoform 2.
    
  0.669
AG1IA_09360
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
 
 0.637
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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