STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_02274Chromo domain-containing protein. (229 aa)    
Predicted Functional Partners:
AG1IA_05031
SET domain-containing protein.
   
 0.977
AG1IA_04755
Histone H3.
   
 0.941
AG1IA_04350
Histone H3; Belongs to the histone H3 family.
   
 0.941
AG1IA_02157
Histone 3.
   
 0.941
AG1IA_00585
Histone domain-containing protein.
   
 0.941
AG1IA_04234
SHREC complex subunit Mit1.
    
 0.939
AG1IA_03809
Histone H2A; Belongs to the histone H2A family.
   
 0.843
AG1IA_00558
RNA recognition motif domain-containing protein.
    
 0.830
AG1IA_05662
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.809
AG1IA_05647
Uncharacterized protein.
    
 0.809
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.