STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_02345Cytoplasmic protein. (674 aa)    
Predicted Functional Partners:
AG1IA_09499
Cell division cycle protein 48; Belongs to the AAA ATPase family.
   
 
 0.920
AG1IA_04128
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 
 0.897
TIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.
    
   0.858
AG1IA_04990
AAA family ATPase, putative.
    
 
 0.792
AG1IA_04978
AAA family ATPase.
    
 
 0.792
AG1IA_08939
60S acidic ribosomal protein P0.
    
 
 0.685
AG1IA_08831
Ribosomal l39 domain-containing protein.
    
   0.685
AG1IA_04190
Uncharacterized protein.
    
   0.685
AG1IA_03601
Ribosomal l38e domain-containing protein; Belongs to the eukaryotic ribosomal protein eL38 family.
    
   0.685
AG1IA_04442
60S ribosomal protein L27a.
    
   0.685
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.