STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_01656Methyltransferase domain-containing protein. (292 aa)    
Predicted Functional Partners:
AG1IA_02818
RNA-binding protein Prp24.
    
 
 0.804
AG1IA_01602
Small nuclear ribonucleoprotein hPrp3.
    
 
 0.758
AG1IA_01687
U4/U6 snRNP-specific spliceosomal protein.
    
   0.678
AG1IA_04320
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 
 0.665
AG1IA_03281
PrmA domain-containing protein.
    
 
 0.659
AG1IA_02805
LSM domain-containing protein.
    
   0.633
AG1IA_02088
LSM domain-containing protein.
    
 
 0.617
AG1IA_00781
LSM domain-containing protein.
    
   0.609
LSM3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 
 0.512
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 
 0.496
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.