STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_00311Transcription initiation factor IIB. (354 aa)    
Predicted Functional Partners:
AG1IA_01229
Transcription initiation factor TFIID-1.
   
 0.999
AG1IA_05566
Transcription initiation factor IIF, beta subunit domain-containing protein.
  
 
 0.996
AG1IA_02294
CMGC/CDK/CDK7 protein kinase.
   
 0.996
AG1IA_06130
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.994
AG1IA_05623
RNA_pol_Rpb5_C domain-containing protein.
    
 0.993
AG1IA_02147
Uncharacterized protein.
    
 0.990
AG1IA_10395
TFIIA domain-containing protein.
   
 0.989
AG1IA_09130
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
    
 0.989
AG1IA_07758
DNA-directed RNA polymerase II polypeptide.
    
 0.989
AG1IA_07011
DNA repair helicase RAD25.
    
 0.989
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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