STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_00296DUF605 domain-containing protein. (323 aa)    
Predicted Functional Partners:
AG1IA_04957
DEAD domain-containing protein.
   
 
 0.869
AG1IA_05878
Nop16 domain-containing protein.
   
  
 0.809
AG1IA_09204
Npa1 domain-containing protein.
    
 
 0.720
AG1IA_09205
NopRA1 domain-containing protein.
    
 
 0.720
AG1IA_03828
Ribosome biogenesis protein.
   
 
 0.685
AG1IA_02289
ATP-dependent RNA helicase DBP9.
   
 
 0.677
AG1IA_02669
ATP-dependent RNA helicase DBP3; Belongs to the DEAD box helicase family.
   
 
 0.660
AG1IA_03260
RNA helicase.
   
 
 0.625
AG1IA_05190
RNA binding protein.
   
 
 0.613
AG1IA_01185
60S ribosomal protein L7.
   
    0.601
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.